research▌

### Deepchem - name: "deepchem" - description: "Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet be..." - allowed-tools: "Read Write Edit Bash"

### Flowio - name: "flowio" - description: "Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing."

### Cobrapy - name: "cobrapy" - description: "Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis." - allowed-tools: "Read Write Edit Bash"

### Clinical Decision Support - name: "clinical-decision-support" - description: "Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment ..." - allowed-tools: "Read Write Edit Bash"

### Get Available Resources - name: "get-available-resources" - description: "This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file wi..."

### Clinical Reports - name: "clinical-reports" - description: "Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP,..." - allowed-tools: "Read Write Edit Bash"

### Exploratory Data Analysis - name: "exploratory-data-analysis" - description: "Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, conten..."

### Matchms - name: "matchms" - description: "Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral..."

### Docx - name: "docx" - description: "Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', or requests to produce ..."

### Exa Search - name: "exa-search" - description: "Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search the web or fetch/extract URL content. Covers: web search (semantic lookups, researc..."