science▌

### Alphagenome Single Variant Analysis - name: "alphagenome-single-variant-analysis" - description: "Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API. Use when the user asks about ..."

### Literature Search Arxiv - name: "literature-search-arxiv" - description: "Search for scientific papers, preprints, and publications on arXiv. Extract metadata, abstracts, and download full-text PDFs or HTML versions of papers. Use when the user asks to find research papers,..."

### Pymol - name: "pymol" - description: "Visualize, analyze, and render protein and molecular structures using PyMOL. Use when the user wants to create images of protein structures, perform structural alignments or superposition, measure dis..."

### Statistical Analysis - name: "statistical-analysis" - description: "Guided statistical analysis with test selection and reporting. Use when you need help choosing appropriate tests for your data, assumption checking, power analysis, and APA-formatted results. Best for..."

### Sympy - name: "sympy" - description: "Use when you need exact symbolic math in Python — algebra, calculus, equation solving, symbolic linear algebra, or code generation via lambdify/LaTeX. Prefer NumPy or SciPy when floating-point approxi..." - allowed-tools: "Read Write Edit Bash"

### Clinical Trials Database - name: "clinical-trials-database" - description: "Query ClinicalTrials.gov via APIv2. Use when you want to search for trials by condition, drug, location, status, or phase; retrieve trial details by NCT ID; check eligibility/inclusion criteria; count..."

### Pytorch Lightning - name: "pytorch-lightning" - description: "Deep learning framework (PyTorch Lightning / lightning package). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, T..." - allowed-tools: "Read Write Edit Bash"

### Transformers - name: "transformers" - description: "Hugging Face Transformers for loading Hub models, running pipeline inference, text generation, and Trainer fine-tuning on NLP, vision, audio, and multimodal tasks. Use when working with AutoModel, pip..."

Search 78 public scientific, biomedical, materials science, and economic databases via REST APIs.

### Xlsx - name: "xlsx" - description: "Create, edit, analyze, or convert Excel spreadsheets (.xlsx, .xlsm) where the workbook file is the primary deliverable. Use for formulas, formatting, financial models, multi-sheet workbooks, and tabul..." - allowed-tools: "Read Write Edit Bash Grep Glob"