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Fast CLI/Python queries to 20+ bioinformatics databases for gene info, BLAST searches, and more.

A toolkit for phylogenetic tree manipulation, analysis, and visualization, integrating with biological databases for phylogenomics.

Comprehensive toolkit for protein language models including ESM3 and ESM C for protein design and embeddings.

DiffDock is a diffusion-based deep learning tool for predicting protein-ligand binding poses, crucial for structure-based drug discovery.

Extract cognitive patterns and thinking fingerprints from any text to analyze reasoning and decision-making styles.

Query the Cancer Dependency Map for gene dependency scores, drug sensitivity data, and gene effect profiles.

COBRApy is a Python library for constraint-based metabolic modeling, essential for systems biology research and metabolic engineering analysis.

Write comprehensive clinical reports including case reports, diagnostic reports, clinical trial reports, and patient documentation with full support for templates and regulatory compliance.

Generate professional clinical decision support documents for pharmaceutical and clinical research settings, including patient cohort analyses and treatment recommendation reports.

Comprehensive citation management for academic research, including searching databases, validating citations, and generating BibTeX entries.