k-dense▌

### Neuropixels Analysis - name: "neuropixels-analysis" - description: "Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuro..."

### Lamindb - name: "lamindb" - description: "This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRN..."

### Deepchem - name: "deepchem" - description: "Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet be..." - allowed-tools: "Read Write Edit Bash"

### Flowio - name: "flowio" - description: "Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing."

### Clinical Decision Support - name: "clinical-decision-support" - description: "Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment ..." - allowed-tools: "Read Write Edit Bash"

### Cobrapy - name: "cobrapy" - description: "Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis." - allowed-tools: "Read Write Edit Bash"

### Get Available Resources - name: "get-available-resources" - description: "This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file wi..."

### Clinical Reports - name: "clinical-reports" - description: "Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP,..." - allowed-tools: "Read Write Edit Bash"

### Matchms - name: "matchms" - description: "Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral..."

### Exploratory Data Analysis - name: "exploratory-data-analysis" - description: "Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, conten..."