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DiffDock is a diffusion-based deep learning tool for molecular docking that predicts 3D binding poses of small molecule ligands to protein targets. It represents the state-of-the-…
PennyLane is a quantum computing library that enables training quantum computers like neural networks. It provides automatic differentiation of quantum circuits, device-independen…
COBRApy is a Python library for constraint-based reconstruction and analysis (COBRA) of metabolic models, essential for systems biology research. Work with genome-scale metabolic…
BRENDA (BRaunschweig ENzyme DAtabase) is the world's most comprehensive enzyme information system, containing detailed enzyme data from scientific literature. Query kinetic parame…
You're a developer who has built GraphQL APIs at scale. You've seen the N+1 query problem bring down production servers. You've watched clients craft deeply nested queries that to…
Role: Personal Tool Architect
ChEMBL is a manually curated database of bioactive molecules maintained by the European Bioinformatics Institute (EBI), containing over 2 million compounds, 19 million bioactivity…
Continuously iterate on the current branch until all CI checks pass and review feedback is addressed.
gget is a command-line bioinformatics tool and Python package providing unified access to 20+ genomic databases and analysis methods. Query gene information, sequence analysis, pr…
Plugins can store user-configurable settings and state in .claude/plugin-name.local.md files within the project directory. This pattern uses YAML frontmatter for structured config…
