ClickHouse MCP Server

An MCP server for ClickHouse.

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Features

ClickHouse Tools

• run_query

  • Execute SQL queries on your ClickHouse cluster.
  • Input: query (string): The SQL query to execute.
  • Queries run in read-only mode by default (CLICKHOUSE_ALLOW_WRITE_ACCESS=false), but writes can be enabled explicitly if needed.

• list_databases

  • List all databases on your ClickHouse cluster.

• list_tables

  • List tables in a database with pagination.
  • Required input: database (string).
  • Optional inputs:
    • like / not_like (string): Apply LIKE or NOT LIKE filters to table names.
    • page_token (string): Token returned by a previous call for fetching the next page.
    • page_size (int, default 50): Number of tables returned per page.
    • include_detailed_columns (bool, default true): When false, omits column metadata for lighter responses while keeping the full create_table_query.
  • Response shape:
    • tables: Array of table objects for the current page.
    • next_page_token: Pass this value back to fetch the next page, or null when there are no more tables.
    • total_tables: Total count of tables that match the supplied filters.

chDB Tools

• run_chdb_select_query
  • Execute SQL queries using chDB's embedded ClickHouse engine.
  • Input: query (string): The SQL query to execute.
  • Query data directly from various sources (files, URLs, databases) without ETL processes.

Health Check Endpoint

When running with HTTP or SSE transport, a health check endpoint is available at /health. This endpoint:

• Returns 200 OK with the ClickHouse version if the server is healthy and can connect to ClickHouse
• Returns 503 Service Unavailable if the server cannot connect to ClickHouse

Example:

curl http://localhost:8000/health
# Response: OK - Connected to ClickHouse 24.3.1

Security

Authentication for HTTP/SSE Transports

When using HTTP or SSE transport, authentication is required by default. The stdio transport (default) does not require authentication as it only communicates via standard input/output.

Setting Up Authentication

1. Generate a secure token (can be any random string):

   # Using uuidgen (macOS/Linux)
   uuidgen
   
   # Using openssl
   openssl rand -hex 32
   

2. Configure the server with the token:

   export CLICKHOUSE_MCP_AUTH_TOKEN="your-generated-token"
   

3. Configure your MCP client to include the token in requests:

   For Claude Desktop with HTTP/SSE transport:

   {
     "mcpServers": {
       "mcp-clickhouse": {
         "url": "http://127.0.0.1:8000",
         "headers": {
           "Authorization": "Bearer your-generated-token"
         }
       }
     }
   }
   

   For command-line tools:

   curl -H "Authorization: Bearer your-generated-token" http://localhost:8000/health
   

Development Mode (Disabling Authentication)

For local development and testing only, you can disable authentication by setting:

export CLICKHOUSE_MCP_AUTH_DISABLED=true

WARNING: Only use this for local development. Do not disable authentication when the server is exposed to any network.

Configuration

This MCP server supports both ClickHouse and chDB. You can enable either or both depending on your needs.

1. Open the Claude Desktop configuration file located at:

   • On macOS: ~/Library/Application Support/Claude/claude_desktop_config.json
   • On Windows: %APPDATA%/Claude/claude_desktop_config.json

2. Add the following:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "uv",
      "args": [
        "run",
        "--with",
        "mcp-clickhouse",
        "--python",
        "3.10",
        "mcp-clickhouse"
      ],
      "env": {
        "CLICKHOUSE_HOST": "<clickhouse-host>",
        "CLICKHOUSE_PORT": "<clickhouse-port>",
        "CLICKHOUSE_USER": "<clickhouse-user>",
        "CLICKHOUSE_PASSWORD": "<clickhouse-password>",
        "CLICKHOUSE_ROLE": "<clickhouse-role>",
        "CLICKHOUSE_SECURE": "true",
        "CLICKHOUSE_VERIFY": "true",
        "CLICKHOUSE_CONNECT_TIMEOUT": "30",
        "CLICKHOUSE_SEND_RECEIVE_TIMEOUT": "30"
      }
    }
  }
}

Update the environment variables to point to your own ClickHouse service.

Or, if you'd like to try it out with the ClickHouse SQL Playground, you can use the following config:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "uv",
      "args": [
        "run",
        "--with",
        "mcp-clickhouse",
        "--python",
        "3.10",
        "mcp-clickhouse"
      ],
      "env": {
        "CLICKHOUSE_HOST": "sql-clickhouse.clickhouse.com",
        "CLICKHOUSE_PORT": "8443",
        "CLICKHOUSE_USER": "demo",
        "CLICKHOUSE_PASSWORD": "",
        "CLICKHOUSE_SECURE": "true",
        "CLICKHOUSE_VERIFY": "true",
        "CLICKHOUSE_CONNECT_TIMEOUT": "30",
        "CLICKHOUSE_SEND_RECEIVE_TIMEOUT": "30"
      }
    }
  }
}

For chDB (embedded ClickHouse engine), add the following configuration:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "uv",
      "args": [
        "run",
        "--with",
        "mcp-clickhouse",
        "--python",
        "3.10",
        "mcp-clickhouse"
      ],
      "env": {
        "CHDB_ENABLED": "true",
        "CLICKHOUSE_ENABLED": "false",
        "CHDB_DATA_PATH": "/path/to/chdb/data"
      }
    }
  }
}

You can also enable both ClickHouse and chDB simultaneously:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "uv",
      "args": [
        "run",
        "--with",
        "mcp-clickhouse",
        "--python",
        "3.10",
        "mcp-clickhouse"
      ],
      "env": {
        "CLICKHOUSE_HOST": "<clickhouse-host>",
        "CLICKHOUSE_PORT": "<clickhouse-port>",
        "CLICKHOUSE_USER": "<clickhouse-user>",
        "CLICKHOUSE_PASSWORD": "<clickhouse-password>",
        "CLICKHOUSE_SECURE": "true",
        "CLICKHOUSE_VERIFY": "true",
        "CLICKHOUSE_CONNECT_TIMEOUT": "30",
        "CLICKHOUSE_SEND_RECEIVE_TIMEOUT": "30",
        "CHDB_ENABLED": "true",
        "CHDB_DATA_PATH": "/path/to/chdb/data"
      }
    }
  }
}

1. Locate the command entry for uv and replace it with the absolute path to the uv executable. This ensures that the correct version of uv is used when starting the server. On a mac, you can find this path using which uv.

2. Restart Claude Desktop to apply the changes.

Optional Write Access

By default, this MCP enforces read-only queries so that accidental mutations cannot happen during exploration. To allow DDL or INSERT/UPDATE statements, set the CLICKHOUSE_ALLOW_WRITE_ACCESS environment variable to true. The server keeps enforcing read-only mode if the ClickHouse instance itself disallows writes.

Destructive Operation Protection

Even when write access is enabled (CLICKHOUSE_ALLOW_WRITE_ACCESS=true), destructive operations (DROP TABLE, DROP DATABASE, DROP VIEW, DROP DICTIONARY, TRUNCATE TABLE) require an additional opt-in flag for safety. This prevents accidental data deletion during AI exploration.

To enable destructive operations, set both flags:

"env": {
  "CLICKHOUSE_ALLOW_WRITE_ACCESS": "true",
  "CLICKHOUSE_ALLOW_DROP": "true"
}

This two-tier approach ensures that accidental drops are very difficult:

• Write operations (INSERT, UPDATE, CREATE) require CLICKHOUSE_ALLOW_WRITE_ACCESS=true
• Destructive operations (DROP, TRUNCATE) additionally require CLICKHOUSE_ALLOW_DROP=true

Running Without uv (Using System Python)

If you prefer to use the system Python installation instead of uv, you can install the package from PyPI and run it directly:

1. Install the package using pip:

   python3 -m pip install mcp-clickhouse
   

   To upgrade to the latest version:

   python3 -m pip install --upgrade mcp-clickhouse
   

2. Update your Claude Desktop configuration to use Python directly:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "python3",
      "args": [
        "-m",
        "mcp_clickhouse.main"
      ],
      "env": {
        "CLICKHOUSE_HOST": "<clickhouse-host>",
        "CLICKHOUSE_PORT": "<clickhouse-port>",
        "CLICKHOUSE_USER": "<clickhouse-user>",
        "CLICKHOUSE_PASSWORD": "<clickhouse-password>",
        "CLICKHOUSE_SECURE": "true",
        "CLICKHOUSE_VERIFY": "true",
        "CLICKHOUSE_CONNECT_TIMEOUT": "30",
        "CLICKHOUSE_SEND_RECEIVE_TIMEOUT": "30"
      }
    }
  }
}

Alternatively, you can use the installed script directly:

{
  "mcpServers": {
    "mcp-clickhouse": {
      "command": "mcp-clickhouse",
      "env": {
        "CLICKHOUSE_HOST": "<clickhouse-host>",
        "CLICKHOUSE_PORT": "<clickhouse-port>",
        "CLICKHOUSE_USER": "<clickhouse-user>",
        "CLICKHOUSE_PASSWORD": "<clickhouse-password>",
        "CLICKHOUSE_SECURE": "true",
        "CLICKHOUSE_VERIFY": "true",
        "CLICKHOUSE_CONNECT_TIMEOUT": "30",
        "CLICKHOUSE_SEND_RECEIVE_TIMEOUT": "30"
      }
    }
  }
}

Note: Make sure to use the full path to the Python executable or the mcp-clickhouse script if they are not in your system PATH. You can find the paths using:

• which python3 for the Python executable
• which mcp-clickhouse for the installed script

Custom Middleware

You can add custom middleware to the MCP server without modifying the source code. FastMCP provides a middleware system that allows you to intercept and process MCP protocol messages (tool calls, resource reads, pro

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